SE0450218

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2588
  • Brassica rapa
  • SE0450218
  • PIF/harbinger
  • To21
  • A02:27746226-27746499
  • AAT
  • TGGGGATGATTGGTTGGGGCTGTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
AA              T  G       -----------A    -     ---C   CAAAATTTAG --  --------  AGCTATATATCTCAACCAATCGAGCTTTGCTTTCCTTAAAAAGCTCACAGCAAAATAATCTCTGCAAAATCAA
  TGGGGATGATTGGT GG GCTGTAG            TGCT CTGGA    AGC          T  CT        AC                                                                         
  |||||||||||||| || |||||||            |||| |||||    |||          |  ||        ||                                                                         A
  ACCCCTACTAACCA TC CGACATC            ACGA ATCTT    TAG          A  TC        CG                                                                         
TA              T  A       GAAATATAAAAA    C     AAAT   ---------- CA  TAAATAAA  ACATCGAAAGGAACGACATCTAAAGATTTCGTGATAAAAAAACGAGACCTTTATTTCGAGAGATGTCGGTATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3