SE0450219

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2589
  • Brassica rapa
  • SE0450219
  • PIF/harbinger
  • To38
  • A03:19047072-19047333
  • TTT
  • GGGTATGAATGGTGACC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTT    A   A        A     CGGTGAGGAATAATGCATTCCCTAACGTTCCTAAAAAAAATCACCATTCACAAGGAATAATAATTCCTTCTCATTCCCTTTCATTTCCTTTTTTGTAGAGAATTT
   GGGT TGA TGGTGACC GGGAA                                                                                                         
   |||| ||| |||||||| |||||                                                                                                         A
   CCCA ACT ACCACTGG TAAGC                                                                                                         
TTT    G   G        -     CCTTAATTCTCCTTGCTTATTTTTTTCTTACATGCCCTTGTTTTATAGTCCTTGCTTTTCCTTACCGACCAGGAATAGTTTTAATTGTTCCTTAGTAAAACAAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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