Plant MITE

SE0410220

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2590
Brassica rapa
SE0410220
Tc1/Mariner
St12
A02:25898619-25898860
TA
TACTCCCTCTGTTTTTAATTATAAGTAGTTTTACTTAAAAGCACAAATATTTAG

Secondary structure and sequence

TSD TIR

5'

3'

                  TTA  A         CTT     ---------     -   TT   AA     TTATCTAAAAAAATATATCATTTAATCAATTAATTCAACCAATTATAAAAAGCTT
TACTCCCTCTGTTTTTAA   TA GTAGTTTTA   AAAAG         CACAA ATA  TAG  AGTTG                                                       
||||||||||||||||||   || |||||||||   |||||         ||||| |||  |||  |||||                                                        
ATGAGGGAGACAAAAATT   AT CATCAAAAT   TTTTC         GTGTT TAT  ATC  ATGTA                                                       
                  TAC  C         CGT     TCAAACAAA     A   TC   AA     TAAAGTTACGTGTAAAAAGTAAATAACCTATAACACACTGGTTATTTTATTATAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0410220

TACTCCCTCTGTTTTTAATTATAAGTAGTTTTACTTAAAAGCACAAATATTTAGAAAGTTGTTATCTAAAAAAATATATCATTTAATCAATTAATTCAACCAATTATAAAAAGCTTAATATTATTTTATTGGTCACACAATATCCAATAAATGAAAAATGTGCATTGAAATATGTAAACTACTTATATTGTGAAACAAACTCTTTTTGCTAAAACTACCTACATTTAAAAACAGAGGGAGTA

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