SE0410221

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2591
  • Brassica rapa
  • SE0410221
  • Tc1/Mariner
  • St8
  • A02:4381844-4382105
  • TA
  • TCCCTCCGTTTCTGAATAAGTGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAC      C     TG         ------------     TG  ATTTTTCACACATATTAAGAAAATAGCGGATATATATGTAAGTTGTTATTAATTACATCTTTTTGACCAATAATATTTGAGATAAATAAAA
   TCCCTC GTTTC  AATAAGTGT            GACTT  AT                                                                                           
   |||||| |||||  |||||||||            |||||  ||                                                                                            
   AGGGAG CAAAG  TTATTCACA            AAAAA  AC                                                                                           
ATC      A     TA         GTAAGATCGAAA     --  AATTGTTTTTTACAGTGAAATGTTAAGGTTACGTTTAAAATGAATGAAAGTTGACTTTTAAATCACGTTTCACGTAACCAAAATATTTATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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