SE0430222

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2592
  • Brassica rapa
  • SE0430222
  • hAT
  • Hat42
  • A08:855944-856684
  • TCAAATAT
  • TAGGGGTGGGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TCAAATAT            --------AAAAAAC  AACCGAACCGATCGAATCGAACCGACTGAACCAAAACCGATTCGAACCAAACCAAAGTCCATTTCAAATTTTTCAGTTGAGATTTTTCTAACCCGAACGGTTCAGTTCAGTTTGGTTTAAACCGAACCGAACCGATAAACCGAAGTGTTTTTATAGTTATTTAAATTAAAAATATTAGTAATATCAAGATATTAAAATCCTAATATTAAGCCCACGTAATTTCCTTTTGCACGAAGGAAATCCTAATATAATTTGATTTCCATGACACTTCGTCTAACTTTTGTAATATTTGTCATTAAGCCCACATAATTTCCATGTTAATTGTTATAAAGTTATA
        TAGGGGTGGGCA               CG                                                                                                                                                                                                                                                                                                                                                 
        ||||||||||||               ||                                                                                                                                                                                                                                                                                                                                                 A
        ATCCCCACCCGT               GC                                                                                                                                                                                                                                                                                                                                                 
TATAAACT            GAAGCCAATAAAATA  CAAGCTAAACTCAAGCCAAGCCAAATCAACCAAGCCAAGATCTTAAAAAAGTCGACTTCATTTGGTATCAATCAAACCAAACCTAGCTAAAGCCAAGTCAATACAAGCCAAGCCAAATATAAGCCAAACTGAACATAAGTTAAGCCAAACATAAAGCCAAGTCAAGCCAAATTAGCTTAAAGAGAATCAAATAAATAACATGTTCTTTAATACAAAATTATGTATTTACATACCAATAGTACTTTATTAGCGCAACCAGTATTATTTTTTTAATTCATACATTTAATTTAAGTTATATTTTGGTTTATTTTTAGAAAAATTTTCAATGTTTATATCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3