SE0430226

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2596
  • Brassica rapa
  • SE0430226
  • hAT
  • Hat68
  • A08:15662275-15662587
  • ATTAATGT
  • TAATGTCAGAGGCGTGC

Secondary structure and sequence

TSD    TIR
5'



3' 
AT     -    A G     CTACAGT   ---    AAAA   ATTCGTTTTAGGCCCCCGATTAATATGGATTTTTTTAGGGCCCCAAAATTTAAAATAAATTTATAATCTAATAGTTTAGACTTATTTTTTAAAAATCATTTCCACATAGTAGACTAATAT
  TAATG TCAG G CGTGC       GTA   TTGA    GGC                                                                                                                        
  ||||| |||| | |||||       |||   ||||    |||                                                                                                                        A
  GTTAT AGTC C GCACG       CTT   AAAA    TCC                                                                                                                        
 T     T    A G     -------   CTC    ----   TCGGATTCTGTTTAAAAATTTTATATGAATAAATGTTGATATTACTTTTGTTAAAACGTTATACTATATAGCGAAAGTGGTTTATGTGTTTAGATTGCGACATTTTCTAATTCAAATACG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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