SE0450228

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2598
  • Brassica rapa
  • SE0450228
  • PIF/harbinger
  • To34
  • A06:23487327-23487609
  • GAA
  • GGCTGTAACTGG

Secondary structure and sequence

TSD    TIR
5'



3' 
GAA            TAAA  --AAGAA   AATACATGGAATAGAAAGGAATGGAATAAGATGAATGGAATGCAGTAGAAAAATGGAATGGATTCATTCCATTTGTTCCTTATCAAAATTGTTTTGGAATGTTTTGCTTTG
   GGCTGTAACTGG    AC       ATG                                                                                                               
   ||||||||||||    ||       |||                                                                                                               T
   CCGACGTTGACC    TG       CCT                                                                                                               
AAG            TAAC  GTAAAAA   TACCTTACGAAACCTTACTAGTTAAGGTAATTAAGGTATTTTTTTAAATGGTAAATTGTACTTACCTTACCTTACGAGTAAGGTAGTTAAGGTTTTTTTAGATTAGTTTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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