SE0450229

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2599
  • Brassica rapa
  • SE0450229
  • PIF/harbinger
  • To1
  • A01:6321806-6321985
  • TAA
  • AGAGCATCTCCATCCCCACTCTATAATTTACTGCAAAATGGAGTGGAAAATAGTGTAGTGAAGAAACAAAAAAATAGATTACTCT

Secondary structure and sequence

TSD    TIR
5'



3'
TA  A                             G     -        A    A T   G    G   C  A    T    TA    ATAA
  AG GCATCTCCATCCCCACTCTATAATTTACT CAAAA TGGAGTGG AAAT G GTA TGAA AAA AA AAAA AGAT  CTCT    
  || ||||||||||||||||||||||||||||| ||||| |||||||| |||| | ||| |||| ||| || |||| ||||  ||||     
  TC CGTAGAGGTAGGGGTGAGGTATTAAATGA GTTTT ATCTCACT TTTA C CGT ACTT TTT TT TTTT TTTA  GAGA    
AA  C                             G     T        C    C T   -    G   T  A    T    --    AGTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End