SE0450231

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2601
  • Brassica rapa
  • SE0450231
  • PIF/harbinger
  • To41
  • A04:10900584-10901214
  • TTA
  • GGGCCTGACTGGTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
  TTA    CT  C      AAA      GGTTGCGGTTGCGGGAGTTTGTGGATGCGGGCGGTTGCGGTTTCTAGCGGTTTTAAGAGATTTGTACGACTGGTAATGCAGTTAAAAATTGGTGCGTTTGCGGGTGACTTATGACTGGTTAACTACCAAATGCGGTAACAGTCAAATAATAAATTAACAATATTTATATTTAATATAATTATAAAAATATCAAAAATCATAAAATTATAATAAATATAAAATTTATATTTAGAAAGTTATAATTTTAATTTTTGAAAATTTATTGAAAATGTTTTTATTATAAAATTTT
     GGGC  GA TGGTTT   CGCAAC                                                                                                                                                                                                                                                                                                 
     ||||  || ||||||   ||||||                                                                                                                                                                                                                                                                                                  
     CCCG  CT ACCAAA   GGCGAT                                                                                                                                                                                                                                                                                                 
ATTCC    --  A      -AG      GGTGGGCGTTTGCGTCGAAAACGCCAACCATCGCCAACAGCCGCCAAACGTTGTTAGTGAGTTTTAGCGAGATTTGGCGAAGTTTGGCAAAGTTTGGCGAGACTTAGAGTATTTAAGTTTTCGACCGAGGTCGATCGCAAACGCCAACGCCCGCCAACGCCCTCCCATTTTAAAAAAAGAAAAAAAAATTTTGTTATATATATGTTTTCATTTTTTATAAATTATTTTTTAAATTTTAACTTTAATACTTTTATAATTTTATATAGATAATATAAAATTAATTATAATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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