SE0410233

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2603
  • Brassica rapa
  • SE0410233
  • Tc1/Mariner
  • St6
  • A10:5943634-5943880
  • TA
  • T

Secondary structure and sequence

TSD    TIR
5'



3' 
             TC --------- TTTCAGTTTAATTATCGTTGTAGAGTATAAATTTTGTTTCAAAATAAATGTCGTTTTATAATTTTAATGCGAAATTTATTAATAATATTTTCTCATTTATTTTTAT
      TACTCTC  C         G                                                                                                          
      |||||||  |         |                                                                                                           
      AAAACAA  A         A                                                                                                          
ATGATG       -- TTAAAATGA CAGCAAAATCCAATTATGTATATCTAATTTTTTGTAAATTAAAACATATAAAGATTTTATTTTTGTGTTAATAGATATGTGTATTAGATTGGTATAAAGTTCGTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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