SE0410236

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2606
  • Brassica rapa
  • SE0410236
  • Tc1/Mariner
  • St11
  • A08:1275461-1275723
  • TA
  • TACTCCTTATGTATCATAATAAGTGGGT

Secondary structure and sequence

TSD    TIR
5'



3' 
        A        AA       -  ---------AT     TTCTTGCACACCGATTAAGGAATTACAAAATTTTATTCAATCTTTATCGTTTGTATAAAAACAACAATAAATACAGATATTTCAACCAATT
TACTCCTT TGTATCAT  TAAGTGG GT           TAAAG                                                                                           
|||||||| ||||||||  ||||||| ||           |||||                                                                                           A
ATGAGGGA GCATAGTG  ATTCACC CA           TTTTA                                                                                           
        G        AA       A  AAACTCTCTCT     ACAAAGTAAAATTCACTACAAAAGTTCAAAGTTACGTTTTTCATTTACGTTAAAATACAAAAACTGATAAACATAAGACTTCATACTAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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