Plant MITE

SE0430237

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2607
Brassica rapa
SE0430237
hAT
Hat69
A01:8267713-8267894
ATACTGCT
GCTCAGGGGCGGACGGAGTG

Secondary structure and sequence

TSD TIR

5'

3'

ATACT  ----           --    -   ------CATC      -    GCACGTGCCCCCAACTAATTTTAAAATTTTCTTTAACAAATGATGTA
     GC    TCAGGGGCGGA  CGGA GTG          GGGTAC GGGG                                               
     ||    |||||||||||  |||| |||          |||||| ||||                                                
     CG    AGTCCCCGCCT  GTCT CAT          CCCGTG TGTT                                               
    T  TCAT           AC    T   CTAAATTATC      T    TCAAAAGTAACATAAAAAAGAAAGTCAACCCCCGTGAATATACATGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0430237

ATACTGCTCAGGGGCGGACGGAGTGCATCGGGTACGGGGGCACGTGCCCCCAACTAATTTTAAAATTTTCTTTAACAAATGATGTAAGTACATATAAGTGCCCCCAACTGAAAGAAAAAATACAATGAAAACTTTGTTGTGCCCCTATTAAATCTACTTCTGCATCCGCCCCTGATACTGCT

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