SE0410238

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2608
  • Brassica rapa
  • SE0410238
  • Tc1/Mariner
  • St11
  • A01:16912220-16912481
  • TA
  • TACTCCCTCTGTATCACTTTTAGTG

Secondary structure and sequence

TSD    TIR
5'



3' 
                    T    --------      AA     TTGCAATTGAATTAAGAAAATACAAACTTCTATACAATTTATCTTGGTTACATAAAAATATCATTAAATGAAATTAATTCAACCAATAAG
TACTCCCTCTGTATCACTTT AGTG        ATTTTT  GGTTT                                                                                          
|||||||||||||||||||| ||||        ||||||  |||||                                                                                           
ATGAGGGAGGCATAGTGAAA TCAC        TCTTTT  TTTTT                                                                                          
                    T    CACAAATC      --     AACAAAGTTTTATTATCTACAAGAGTAACAAGATCTATCTTAAATTATGGTAAATTTGAAACACTGGTTAACATTTTATGACTAAAAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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