SE0450239

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2609
  • Brassica rapa
  • SE0450239
  • PIF/harbinger
  • To22
  • A05:12525942-12526194
  • TAG
  • GGGGTGTGACTGGTAACCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                   TCATAGGAACAATAGGAACGGATAGGA                TAAATTTTTAGGAATGATTGTTCCTTATCAAAATTGATAAGGAATTGATTTGTTCTATAATTCTTTACAAATAAAA
  GGGGTGTGACTGGTAACCA                           AAGGAATGAATAGGAA                                                                            
  |||||||||||||||||||                           ||||||||||||||||                                                                             
  TCCCACACTGACCATTGGT                           TTCCTTACTTCTCCTT                                                                            
GA                   ---------------------------                GTGATACAAGGAGTTATAAGGAATTTGTAAAATGGTAAGTACTCCTTATTAAAAAATAAAAGTAAGGAGAAGTAAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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