SE0410242

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2612
  • Brassica rapa
  • SE0410242
  • Tc1/Mariner
  • St3
  • A08:17590295-17590558
  • TA
  • TACTCCCTCCGTTTTTCAATATAAGTCGCTTTAGAG

Secondary structure and sequence

TSD    TIR
5'



3' 
                C           C       AAATTTTTTTGTTCTAAATTATATG   TTTTCGGTTTTCTATGTAACATTTATTAATAATTAATGTTGTCTGACCAATGATAATATATCTTCTATTTTTCTATTGGT
TACTCCCTCCGTTTTT AATATAAGTCG TTTAGAG                         TCG                                                                                
|||||||||||||||| ||||||||||| |||||||                         |||                                                                                T
ATGAGGGAGGCAAAAA TTATATTCAGC AAATTTC                         GAT                                                                                
                A           A       -------------------------   ACGTGTATCTAATTCTTTTAGTAATTAAAGAATATAAAAGTTTTGTTTTTGTAATAATTAATAAATGGATTGGTGTTAAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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