SE0450244

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2614
  • Brassica rapa
  • SE0450244
  • PIF/harbinger
  • To38
  • A10:8920659-8920920
  • TTA
  • AGGCTCTGACTGGTGACC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT     C   C              GGAACACGAGGAACAAATAGGAAAGGAACGTATAGGAATAAAATTGCAGGAATTGGAAGGAATGCTTGTTCCTTGTCAAATTTAACCAGGAATGTTTTTGTTCTA
  AGGCT TGA TGGTGACCTTTTCG                                                                                                         
  ||||| ||| ||||||||||||||                                                                                                          
  TCCGA ACT ACCACTGGTTCCTT                                                                                                         
AT     A   T              GCCTCCCCTTGTGACTTAAGGAATAGTAAGGGTTTTTTTTAGTGGTAAGTGTTCCTTATCAAAAAAGAAAAACAAGGAGAGGTAAGGAAAAAAACATCTCTTTAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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