SE0410245

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2615
  • Brassica rapa
  • SE0410245
  • Tc1/Mariner
  • St1
  • A09:32588443-32588693
  • TA
  • TACTCCCTCTGTTCCTAAATAGAGGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
                     G     GTTTA     GTTTTTATGTTCCAATATGTAGGATGTTCTCATATTTCTAGGTACCTTTAACTTTATTAAAAACTGTGTAACCAATCAAATTTAATAGTTC
TACTCCCTCTGTTCCTAAATA AGGAT     GAATA                                                                                           
||||||||||||||||||||| |||||     |||||                                                                                            
ATGAGGGAGACAAGGATTTAT TTCTA     AAAAA                                                                                           
                     A     -----     TCCATTTTGTGTGAATAATTCTTTCAATAAAAAATAGATTTTTCATAGTAATTTAGAAATTTAATTTTTGATAAGTTGGTTAATATTTTAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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