SE0450246

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2616
  • Brassica rapa
  • SE0450246
  • PIF/harbinger
  • To42
  • A03:2166823-2167073
  • GAA
  • AGTGCTGTTCGTTTGGTTGACGTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
GAA   GC              A     CTACCT  CG T      T  CAATTTTTTT    AACTC           ATT        TAC    -----  T   TCTAAATGCTGCGTCCTCGCGTT
   AGT  TGTTCGTTTGGTTG CGTAG      GC  C GCGTCG GT          AATA     TTGTTCGTTTC   GACGCCGG   TGCG     TC GCG                       
   |||  |||||||||||||| |||||      ||  | |||||| ||          ||||     |||||||||||   ||||||||   ||||     || |||                       G
   TCA  ACAAGCAAACCAAC GCGTC      CG  G CGCAGC CG          TTAT     AACAAGCAAAG   CTGCGGCT   GCGT     TT AGA                       
AAG   GT              G     AAAAGC  CA T      -  -CCTTTACTT    -CAAC           CAT        ---    CAAAA  -   GTCTGCGTCTAAAAAAGCCGCTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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