SE0430249

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2619
  • Brassica rapa
  • SE0430249
  • hAT
  • Hat72
  • A01:15116813-15117078
  • ACTGCAAT
  • TGCAATCAGGGCCGTGCCTGATA

Secondary structure and sequence

TSD    TIR
5'



3' 
AC    A         T        --      CCATCAAGCATTGGCTTTGGGGCCAACAAAAGAATATTTATTTTAGGGACCAAAAATAAATGAAGTTTCTCTTTAGTTCTGGTGGTAAAAGCTAGATATAT
  TGCA TCAGGGCCG GCCTGATA  CCAAGC                                                                                                     
  |||| ||||||||| ||||||||  ||||||                                                                                                      
  ACGT AGTCCCGGC CGGACTGT  AAGCCC                                                                                                     
TA    C         C        TA      GGGTCTTCGTTTTTTTTTTAAAAAACCGGGTATTAGAATTATTTTGTACTTTTATAATTTTCCACAAGGGTACAATAAGCTTGGGTATTGGAGAGGGACAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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