SE0450251

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2621
  • Brassica rapa
  • SE0450251
  • PIF/harbinger
  • To41
  • A05:15786154-15786656
  • TAA
  • GGGGGCGACTGGTT

Secondary structure and sequence

TSD    TIR
5'



3'
TAA    G -        TTTCCGCTACCACCCG          TT         -  --  --     GTC  -  -     CAACAATCACTCAAATC  TCTAAACCGCTTCAAACCGCTTCAAACCGCTCCGAGTCTCATAAATTCAAAAGCTGGCTCCAGCTAGCGTTTGCGGTTGCGGGTGGTTGCGGGAGGGTAAAATTTTTTTCTTTTTTTAAAAAATAATATATATACAAAAGTAAAAATATTTAATAAAAATTTTTAAAATTGA
   GGGG C GACTGGTT                CAAACGCAGC  TTGCGGTTG GT  AG  CGGTT   GG TG GTTTG                 GC                                                                                                                                                                            
   |||| | ||||||||                ||||||||||  ||||||||| ||  ||  |||||   || || |||||                 ||                                                                                                                                                                             
   TCCC G CTGACCAA                GTTTGCGTCG  AACGCCAAC CG  CG  CGCAA   AC CC ACGCC                 CG                                                                                                                                                                            
 AA    G A        ----------------          CC         A  AA  TC     ---  A  T     -----------------  CCAACGCCAAAGATTGCCAAAATTCTCTAAACATGCTGACCATGACGCCAATTTTTAACCACGCAAACGCCCACTGAATATGAGCAATTGATGGATTTACGCCATTGTCAGTTTATTATTTAATTGTTATAAATGTAAATATATTATCTATATAAAATTATAAAAGTATTAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End