Plant MITE

SE0430253

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2623
Brassica rapa
SE0430253
hAT
Hat12
A04:2053487-2054160
TTCACGAG
GAGTAGAGATGGCATTTTGACCGCAGCCCGCGGGCCTGGCCCGT

Secondary structure and sequence

TSD TIR

5'

3'

TTCAC                 T -     --AG      --      G     ACAAGACCCA       C  A      TA    TAATC -  ---     TTTAAAAGCGGGTCTCGCGGGTAAGTGTCATGCGGGTTTGGGCTTTTGCGGTCTAGGCTCAGCGGGTCTTGCGGGGTCGACATAACCCGCGACCACTTCCTCATTTGCTGTCTTTACACCTGAAAAAAAAGAGTCAAGAGACGAAAATGGCGATCAGGGTTCTCTACAGCACGACTCCACCAACGAGCACCAGAGGAGCAGCACCACCAACCGATTCTTCTTCTCCTCGACTAAGACCACCATCAG
     GAGTAGAGATGGCATTT G ACCGC    CCCGCG  GGCCTG CCCGT          TGCGGGG GG TTTGGG  AAGG     G AA   GCCCA                                                                                                                                                                                                                                                      
     ||||||||||||||||| | |||||    ||||||  |||||| |||||          ||||||| || ||||||  ||||     | ||   |||||                                                                                                                                                                                                                                                      A
     CTTATCTCTACCGTAAA C TGGTG    GGGCGT  CCGGGC GGGCG          ACGCCAG AG GAGAGG  CCGC     C AG   CGCCC                                                                                                                                                                                                                                                      
GAGCA                 C A     GGCG      AA      G     ----------       -  A      --    ----- A  AAA     ATTCGGGCGGCACTGGGCGCCATGAATTTGGAGACGGGTTTGGGCGGGGCGAATGATGTATCCTGTAACGCCCGACCGGGCGCCCATACGTTTTGTACTACAAAGTAACCCCACTCGAACTCTTCTACAACAACAACAACAACAACGTGCCACGTTGAACGAAGCCTGCTCCTCTACCTCTCAAGGTCACCTTCGAGCTCCTTCCTCTCTTCGAGGTCACCACCACCTTTCTTCTACCTCTCTTCG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0430253

TTCACGAGTAGAGATGGCATTTTGACCGCAGCCCGCGGGCCTGGCCCGTACAAGACCCATGCGGGGCGGATTTGGGTAAAGGTAATCGAAGCCCATTTAAAAGCGGGTCTCGCGGGTAAGTGTCATGCGGGTTTGGGCTTTTGCGGTCTAGGCTCAGCGGGTCTTGCGGGGTCGACATAACCCGCGACCACTTCCTCATTTGCTGTCTTTACACCTGAAAAAAAAGAGTCAAGAGACGAAAATGGCGATCAGGGTTCTCTACAGCACGACTCCACCAACGAGCACCAGAGGAGCAGCACCACCAACCGATTCTTCTTCTCCTCGACTAAGACCACCATCAGAGCTTCTCTCCATCTTCTTTCCACCACCACTGGAGCTTCTCTCCTTCCTCGAGCTTCCACTGGAACTCTCCATCTCCTCGTCCGAAGCAAGTTGCACCGTGCAACAACAACAACAACAACATCTTCTCAAGCTCACCCCAATGAAACATCATGTTTTGCATACCCGCGGGCCAGCCCGCAATGTCCTATGTAGTAAGCGGGGCGGGTTTGGGCAGAGGTTTAAGTACCGCGGGTCACGGCGGGCTTACCCGCAAAGAACCGCCGGAGAGAGAGACCGCAGCGGGGCGGGCCAATGCGGGGCGGGTGGTACCAAATGCCATCTCTATTCACGAG

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