SE0430255

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2625
  • Brassica rapa
  • SE0430255
  • hAT
  • Hat30
  • A01:26499961-26500150
  • TCTACTTA
  • ACAGGGCCGGTCT

Secondary structure and sequence

TSD    TIR
5'



3' 
TCTACTT    G        CGA  A   ----   A GTAACCGACCGCTTAGGGCATCATATTTTAAGCGAAAAATTTAGTTTTATATAGGGCATAA
       ACAG GCCGGTCT   GC TAA    GCG G                                                             
       |||| ||||||||   || |||    ||| |                                                             T
       TGTC CGGCCAGG   TT GTA    TAA A                                                             
ATTCATC    A        ---  -   AAAG   - AAAAGAACTACGGGATTCGAGCAAATTTTAAAATACGGAAACAATAAGTATATATTTTTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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