Plant MITE

SE0410256

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2626
Brassica rapa
SE0410256
Tc1/Mariner
St12
A04:12369471-12369722
TA
TACTCCCTCCGTTTTATAATGTAAGTAGTTTTGG

Secondary structure and sequence

TSD TIR

5'

3'

                  A               CTAAAAGCACAAAAATTAA     TT   A          A   TT   ------------TATTAAA   --   AGATATAACTTAACCAATCAAAAATAAGTTTAT
TACTCCCTCCGTTTTATA TGTAAGTAGTTTTGG                   GAAAA  ATT TGTTTTAAAA GTA  GTA                   TAG  GTT                                 
|||||||||||||||||| |||||||||||||||                   |||||  ||| |||||||||| |||  |||                   |||  |||                                  
ATGAGGGAGGCAAAGTAT ATATTCATCAAAATC                   CTTTT  TAA ACAAAGTTTT CAT  CAT                   TGA  ATG                                 
                  A               -------------------     TT   A          A   -T   CAAAAGTATAAAGATCCAT   AA   TAAATAACTCATATCACACTGGTTAGTTTAATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0410256

TACTCCCTCCGTTTTATAATGTAAGTAGTTTTGGCTAAAAGCACAAAAATTAAGAAAATTATTATGTTTTAAAAAGTATTGTATATTAAATAGGTTAGATATAACTTAACCAATCAAAAATAAGTTTATTTAATTTGATTGGTCACACTATACTCAATAAATGTAAAAGTTACCTAGAAATATGAAAACTACTTACATTTTGAAACAAAATTTTTTTCCTAAAACTACTTATAATATGAAACGGAGGGAGTA

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