SE0430258

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2628
  • Brassica rapa
  • SE0430258
  • hAT
  • Hat24
  • A01:13189627-13190037
  • TTAGTATG
  • TAGTATGCAGTGCTTTTAAAAC

Secondary structure and sequence

TSD    TIR
5'



3' 
 T  G  T  A   C         --C       A    GAATCCGATAATTTTTGGGTCACGGTTCAATATGGTTCGACCGGATCAAACTTGGTTCAATAATCTGGTTTAATATATTTTAATATATAGATTTAAAAGTAATGTTAACAAATATGATACATAATTAAAATAAAAATAAATTTAAAGCATAAAATACTATAAATATAAA
  TA TA GC GTG TTTTAAAAC   GGACCGG AACT                                                                                                                                                                         
  || || || ||| |||||||||   ||||||| ||||                                                                                                                                                                          
  AT AT TG CAC AAAATTTTG   TCGCTGG GCTA                                                                                                                                                                         
GT  G  -  C   A         ACC       -    TCAACTTGGCCCAAGCTGATACTTGGCCAATGTATCGGCCCAAACCAGATTATTTACCAAGCTGGTACTTGGCCGGTGCATCGATCTAATCTAGAATCTCAATAATTTGACTATTTTTGGTAATTTTGATAGTTTTTAGCTATTTGGTAAGTATATTTGTATTTTAATC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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