SE0420261

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2631
  • Brassica rapa
  • SE0420261
  • Mutator
  • M6
  • A03:26531665-26531965
  • AAATAAAAA
  • CCAAAATAGCATTAAATCAAGTTTTTGATCCCAAACTAGCACTCAAGGCCAAAAGT

Secondary structure and sequence

TSD    TIR
5'



3' 
AAATAAAAAGAGAAAAAGA             AAA  -      TTG   C    -C            C A     CACA         --------     GGGA    --G    GGGTTTAGAGTTTAGGTTTTAGGGTTTAGAGTTGAGAAGTG
                   CCAAAATAGCATT   TC AAGTTT   ATC CAAA  TAGCACTCAAGG C AAAGT    AAAATAGTA        CTCAA    TGGG   TTTA                                         
                   |||||||||||||   || ||||||   ||| ||||  |||||||||||| | |||||    |||||||||        |||||    ||||   ||||                                         A
                   GGTTTTATCGTGG   AG TTCAAA   TAG GTTT  ATCGTGAGTTTT G TTTTA    TTTTATCAT        AAAAC    TTTT   ATTT                                         
AAAAATAAACCCGTTTAGA             -AA  A      -TA   T    TT            T A     CTCG         AAAAATAG     ----    AAA    AAAAAAATAAAAAGTTTTAAACTTTAGAATAGGGGTTTTGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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