Plant MITE

SE0430265

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2635
Brassica rapa
SE0430265
hAT
Hat39
A05:5435590-5435854
CCTAGAAC
CTAGAACCAGGGCCGGGCCTGA

Secondary structure and sequence

TSD TIR

5'

3'

  C    AAC               ------   - A  CTCATCAAGCATTAGCTTGAGGGTCGATAGTGTTAAAAATAATTTAGGGGCCAATTACATCAAATGTCTGACTGTTCAGATGTCAAAATTTGGTTGCCA
   CTAG   CAGGGCCGGGCCTGA      GCA C GG                                                                                                   
   ||||   |||||||||||||||      ||| | ||                                                                                                   A
   GATC   GTCCCGGCCCGGACT      ATC A CG                                                                                                   
CAA    --C               GTATAC   C -  TCTTCGTTGATTTTAAATAAACCGGGATATTGTTGAAAAAGATTTTTTTTAACAACGCTTAAGCAACACATACGCAAAGCTTGAGCCGGGGGATTCAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0430265

CCTAGAACCAGGGCCGGGCCTGAGCACAGGCTCATCAAGCATTAGCTTGAGGGTCGATAGTGTTAAAAATAATTTAGGGGCCAATTACATCAAATGTCTGACTGTTCAGATGTCAAAATTTGGTTGCCAATAACTTAGGGGGCCGAGTTCGAAACGCATACACAACGAATTCGCAACAATTTTTTTTAGAAAAAGTTGTTATAGGGCCAAATAAATTTTAGTTGCTTCTGCACCTACATATGTCAGGCCCGGCCCTGCCTAGAAC

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