SE0430267

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2637
  • Brassica rapa
  • SE0430267
  • hAT
  • Hat75
  • A02:12076642-12076815
  • AGTGTATA
  • TGTATACAGTAGCGAA

Secondary structure and sequence

TSD    TIR
5'



3' 
AG       --  TA     -----TCCAAA        TGACTGG    ACACCCTGTAAATTTACCAATGACAATATGTGTATATATGAAATT
  TGTATAC  AG  GCGAA           CTAATTTC       GTGC                                             
  |||||||  ||  |||||           ||||||||       ||||                                              
  ATATGTG  TC  CGCTT           CTCTCCCC       CACG                                             
         AG  CC     CGATCATTCCT        -------    TGTACGTGGGTATTATAAAAGTTTTTTATCACACAAGGAGTAGGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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