SE0430268

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2638
  • Brassica rapa
  • SE0430268
  • hAT
  • Hat14
  • A05:2468504-2469037
  • ATTTGCTG
  • GCTGTAGGGGTGGGC

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTT  --TG           ------        --        - GGTTCGGGTCGGGTATTTTGGATTTTCGGGTATTTCGGTATAGAGGTGTAGAACCCGTTCGGGTATTTCTATACTTCGGGTCGGGTTCGGGTATTTTTAGTTCGGATTCGGTTATTTCGGATCGGATTCGGATATTTAGATTTTGAAAAAAAAATTAAATTTTTCATTTCTTAAATTTCTTGTATTTAAAAATATAAATTTTACTTAACTTCTTTTTATTTTTAAT
    GC    TAGGGGTGGGC      GTTCGGGT  ACCCGTTC G                                                                                                                                                                                                                                  
    ||    |||||||||||      ||||||||  |||||||| |                                                                                                                                                                                                                                  A
    CG    ATCCCCACCCG      GGGCTATA  CTTCACCG G                                                                                                                                                                                                                                  
  GT  TTTA           TGAAAT        GG        T GGCTTGGGCTAGGCTTTTTGGGCTTGGCTTTAGGCTTGGCTTCATTGTTTTATGGGCTTGCCCATAACTTAATCCTCTCTAACCTATGGGCTTGGGCTTACCTATTATAGGCTTGGGCTTACCTATAGGCTTCTATTGGCTTGTATACATATTAATTGGAATATAAAGATCAAATGTAGAAAAAATCAAAATTTTACAATACAGGTTTAGATAATTGGTAAATTAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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