SE0450273

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2643
  • Brassica rapa
  • SE0450273
  • PIF/harbinger
  • To41
  • A02:6433321-6433963
  • TAA
  • TAAGGGTATGACTGGTTTTTCCGC

Secondary structure and sequence

TSD    TIR
5'



3' 
       A          TT        - C       TGCAGCTTTTGCGGTTGGTAGCGGTTGCTGGCGTTTTGCAACAATCGCTCAAACCGCTCTAAACCGCTCCAAATCGCTCCAAATCGCGCCAAATCGCTCTGAACCTCATAAATTCAAAAGCTGGTTCCAGCTAGCGTTTGCGGTTGCGGGCGTTTGCGGGAGGATAAAAAAAATTATTTTTTTTCCAAAACAATATAAATACAAAAATAAAAAAATTCAATAAAAAAATTAAACTGAAATTATAAAAATGCTAAAATATATCAATTAAATTTTAATTAATATTA
TAAGGGT TGACTGGTTT  CCGCTACC A CCGCAAA                                                                                                                                                                                                                                                                                            
||||||| ||||||||||  |||||||| | |||||||                                                                                                                                                                                                                                                                                            T
ATTCCCG ACTGACCAAA  GGCGTCGC A ACGCCAA                                                                                                                                                                                                                                                                                            
       G          TT        C -       CGCCAACGCCCTCAAACGCCTACGCCCACCAACGCCAAAGATCGCCAAAATTCTCTAAACATGCTGACCAATACGCCAATCTTTAAACACGCAAACGCCCTATGAATACTGACCAATTGATGGTTTACGTCGTCGTCAATTTATTATTTAATTGTTATAAATGTAAAATATGTTAATATTTTTATAGTTTTTATTATTATAATATTATTTATATTTTAAATATAAATCTTTCAATATCAAATTTAAAAAATTTTTATATCTTTTATAAAAATAAAATTTCAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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