SE0430276

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2646
  • Brassica rapa
  • SE0430276
  • hAT
  • Hat78
  • A03:9525204-9525669
  • TCAATAGT
  • GTCAGAGTCGTGC

Secondary structure and sequence

TSD    TIR
5'



3' 
TCAATA T   A       TCA  TTATCAATTTTGGGGCATTGGGTTCAGGTCCCTTCTCACATTAGTACATTTTGAAGCTTCCATATTCATAAATCATATAATCAATATATGATAGTATGATAAAAACTATAATTATCTTTTAATACTTTTTAATAATATGACCATTTATGCTTAGTTGTTGTGAAATTTTATTGTATATTTTTTTTATTTTGAATGTCGAAAACATTTTC
      G CAG GTCGTGC   CC                                                                                                                                                                                                                 
      | ||| |||||||   ||                                                                                                                                                                                                                  
      C GTC CGGCACG   CC                                                                                                                                                                                                                 
TGATAA T   A       CTT  GATAATCCTTGAATCCTGTTTTTATTAAATAAAATATAAATTTATATGCATAATTAAAAAAGATTATGTTTAGTCTTTTATTTAACAAAAAAAAAGTAAAAGATAAAATTTTAATAAAAATTCTTTTTAGTCAAAATACTTTTAATTACCGTTTTCAATATAAAACCAATGTTGACTTTTAACATATATGTTTGAGTTTAATATATGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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