SE0420277

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2647
  • Brassica rapa
  • SE0420277
  • Mutator
  • M4
  • A09:33585122-33585474
  • TATAACTTA
  • TAGGGCAATTGTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TATAACT     C  TT T AATA        TTT G          -      AA       AG    -AG                 CA          -      -    CCCTAATA      ------     AAATTAAATAAACAAACAAAAATAAATAAAAATAAATAAAAAACT
       TAGGG AA  G C    ATAGCACC   T AAGTTTATGT CTCAAA  TAGCACT  AAGG   AAAGTCACAAAAATGGA  TTCATTAAAG GGTAAA ATAT        CCCTTG      GTTTA                                             
       ||||| ||  | |    ||||||||   | |||||||||| ||||||  |||||||  ||||   |||||||||||||||||  |||||||||| |||||| ||||        ||||||      |||||                                              
       ATCTC TT  C G    TATCGTGG   G TTCAAATACA GGGTTT  ATCGTGA  TTCC   TTTCAGTGTTTTTATCT  AAGTAATTTC CCATTT TATA        GGGAAC      AATTA                                             
ATTCAAT     T  TT T ATCC        TTT G          A      -C       -A    AAG                 -A          T      A    TAAATATG      CCAATT     GGTTTGGAATCCCAAATCTCAATTCCCCACCCCAAAACCTTAATC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3