SE0430278

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2648
  • Brassica rapa
  • SE0430278
  • hAT
  • Hat79
  • A09:32791393-32792097
  • ATAGTTGG
  • CAGTGCCGTGCGAAGGTTTAGT

Secondary structure and sequence

TSD    TIR
5'



3' 
ATAGTTGG   T       -GA    T    -----    CCTAAGGCGAATATAAAAATGGGTTCCCCTTATAATTTTTTTTTATTAGAGCATAATATATATTTGAAAAAATATTAAGAAGAAAAATAATAATTTAAAAAACTAAGACAAATTTTTCTTTCTTCTTTTTCAATAAACTTTTTAACTAAATTCTCATAATATAGATTCCTAACTAATTATCTTTCTATAAATATAAGTACTAAACCATTTAACTTTTCTTGTGATATGGTTGATCGCATATAAAATTTTACGAGTTTCCACTTGGAAAAACTTTTTTCAGCAGTAACTGAAACTGAAATCGTCAATAGTATTTAA
        CAG GCCGTGC   AGGT TAGT     AGGG                                                                                                                                                                                                                                                                                                                           
        ||| |||||||   |||| ||||     ||||                                                                                                                                                                                                                                                                                                                           T
        GTC CGGCACG   TTCA ATTA     TCCG                                                                                                                                                                                                                                                                                                                           
GGTTGATA   T       AAG    C    ATTTT    AAAGCGGATCCCGGGGGTTTTATATACCAAAAAAATTCCGGGGTTTATAGTCTTTTATTAATCATCATATCACCAAATTCAAACGGTAAATAAATATTTGATTTTTTAGTCGTTCACTTCTATTAAACTACCGTAGAATATGGTTAAAAGTTCGTCGAAATTCCGTACATTTAGTAAGACTACAATAACCCCTACTAAACACAAAACTGGACTACCAAGATTTTCTTTACAACGGTATTCTAATGTTCTCTGGAGAACTTCAAGACTTAAAAAACTTTCCTTCCCTTCTCACAATAGGTCTGAGTATTTAAAGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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