SE0450279

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2649
  • Brassica rapa
  • SE0450279
  • PIF/harbinger
  • To27
  • A03:30688290-30688658
  • TAA
  • AGGGCATCTCCAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   G         -----CCATTA    CATTTAGTGTCAAAACAACACTATTTTAGTGTAATTTCAACACTAAAACTAAAGTCTTCTCCAACCATAACACTAAACTTCACACTAAAACTATTTTATAATATTATATATATTAAGTTTTTTATTTACCATTTATTTAATTGTATGTTTTAATAAT
  AGG CATCTCCAA           GCAC                                                                                                                                                             
  ||| |||||||||           ||||                                                                                                                                                              
  TCC GTAGAGGTT           TTGT                                                                                                                                                             
AA   G         ACCTTGACGTT    GATAAAATCACACTAAAAATGTGGTTTAGAAGAGGTTACCTTGACGTTTTTAGTGTGGTAAAATCACGTTGTGATTTTAAACTGTGGTTTAAACCACACTGTGATAAGTGGTGTGATTTTGTGATAAGTAGGGTGATTTTGTGATAAGTGAATAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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