SE0410280

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2650
  • Brassica rapa
  • SE0410280
  • Tc1/Mariner
  • St1
  • A09:261968-262219
  • TA
  • TACTCCCTC

Secondary structure and sequence

TSD    TIR
5'



3' 
      C   G          GATGATGTTTTGGAGAGTTTAAAATGTTTCAAAATACTTGATGTTTTGATTTTTTTATATTAGTTTTAGTTTTACAGAAAACTGTGTCATCAATGATGTTTTATC
TACTCC TCC TTTCAAAATA                                                                                                         
|||||| ||| ||||||||||                                                                                                         G
ATGAGG AGA CAAAGTTTTA                                                                                                         
      T   -          TGAACTACAAAATCTACTTACGTGTTCTTAATTCTGTATGAGAAAAAAGATTTTTCATTGTAATTTTTATATTTCATTTTGATTAAGTCGGTTAGTGTTTTGGAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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