SE0430281

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2651
  • Brassica rapa
  • SE0430281
  • hAT
  • Hat80
  • A06:5183473-5184154
  • ATGGATCC
  • GGATCCTAGGGGTGGGCGTTCGGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
AT      --     G     -----        --------      T  GGTTCGGTTCGGGTTTATTCGGGTTTCAGGTTTTCGGGGTTAAAGATTTCAGCCCCATTCGGGTATTTCTAAATTTTGGTTTGGATCCTTCCAGGTTCGGTTCGGGTTCGGATAACTCATTTAAATGATTTTTAAAATTTTAAAATTCAATATATAGTTTAAATTTCTCAAAACCTGTAAATAAAATACTATTTTACATATAAATTTGAATAAAATATGTCAGAATACCTAAACTTAACATATAAATTGGTTTGCTTTGAATATTTTGATAGAGAATTAGTAGATATTTAAAGTATTTT
  GGATCC  TAGGG TGGGC     GTTCGGAT        GCCCAG CG                                                                                                                                                                                                                                                                                                           
  ||||||  ||||| |||||     ||||||||        |||||| ||                                                                                                                                                                                                                                                                                                            
  CCTAGG  ATCCC ACCCG     TAGGCCTA        GGCTTG GC                                                                                                                                                                                                                                                                                                           
        TA     G     TTTTT        GGCTTCTT      -  TTGGGCTAGGCTTTTCATCATGGATTGGGCTTGACCTTAACTAATTTATAGGCTTGTCCAAATTTTAAAACCATAGGTCTCTTGGCTTTGACTTTGGCTGGGTTTGGCTTCATAAAGTCCATAGGCTTACATATGCTTTATTTAAAAATATAGATTTAAATAATTAATAAAAAATAAATTACATTTAATTTTTGTAGGTTTTATATATTCTATGAAAATCCAACAGATTTTATGAACTTTTATATATATTTATCAGTTTTCATTTACAGATTTTACCGATTTTATATGAGTTTTAAGGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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