SE0420287

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2657
  • Brassica rapa
  • SE0420287
  • Mutator
  • M5
  • Scaffold000224:34443-34610
  • TAAAATCAA
  • AGGGTTAATTTGTTGAATAACTA

Secondary structure and sequence

TSD    TIR
5'



3'
TAAAATCA    TT      -T G        TATTG        CT  GT   G  G   GA  G  GAGAGAGATAGGAAGAAAAA
        AGGG  AATTTG  T AATAACTA     GAAGAAAT  TA  TTT TA TAA  GA TA                    
        ||||  ||||||  | ||||||||     ||||||||  ||  ||| || |||  || ||                     
        TCCC  TTAAAC  G TTATTGGT     TTTTTTTA  AT  AAA GT ATT  TT GT                    
AACTAAAA    -T      TT G        ---TG        --  AT   -  G   GA  G  AAAGGAAGGGAGAAAGGAAG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End