SE0430293

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2663
  • Brassica rapa
  • SE0430293
  • hAT
  • Hat58
  • A02:7990997-7991270
  • AGATCTAT
  • AGATCTATCAGTGGCGGAG

Secondary structure and sequence

TSD    TIR
5'



3' 
       TA    T       -----------CC     TTTT    ACCGGGGTCATAATTTTTTTTTTCAAAAACATAATTTATAAACCATTAAAAACTACAAATTATAACTTTAATTTTTAATGTATTGTAATTATTTTAGTA
  AGATC  TCAG GGCGGAG             AGAAA    TTAT                                                                                                   
  |||||  |||| |||||||             |||||    ||||                                                                                                   T
  TCTAG  AGTC CCGCCTC             TCACC    CCAG                                                                                                   
TA     --    C       CATCACTTCCTCT     ----    TCGACTGGGGTGATAAAAAATTTTATATAAACAAAAACAAATTCTTTTTTTAATAACTGGGGTAATTTTATATTTTAAACTGGGGTGTTTTCTATATTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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