SE0450295

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2665
  • Brassica rapa
  • SE0450295
  • PIF/harbinger
  • To2
  • A02:13881531-13881789
  • TAA
  • AGACCATCTCCAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   C          GGC     --               AAATAGAGCAACTCTATAATAGAGTTTGAATTTACTCCAATGGTACTCTATTTTAGAGTAGAAAATAGAGTGATGAACAAAAAAAAACAA
  AGA CATCTCCAAT   TTACT  CTATTTTTTACTCTA                                                                                          
  ||| ||||||||||   |||||  |||||||||||||||                                                                                          A
  TCT GTAGAGGTTG   GGTGA  TAAAAAATAAGATTT                                                                                          
AA   C          --G     AA               TATTTTAAATCTTATTTTTTACGAGGTTACCATGATATAAAGAGTAAGATATTATCTCACTTTTTATCCAAATGAGGTTTATATCTTATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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