SE0450299

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2669
  • Brassica rapa
  • SE0450299
  • PIF/harbinger
  • To41
  • A07:10490063-10490499
  • TAA
  • AGGGCCTGACTGGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA    CC         CAAA   -    GTTGCGATTGCGGTTGCGGGAGTTTGTGGATGCGGGCGGTTGCGGTTTCTACTGGTTTTAAGAGATTTGTACGACTGGTACTTAAAAATTGGTGCGTTTGCGGATGATTTATGACTGGTTAACTACCAAATGCGATAACAGTCAAATAATAAATTAACAATATTTACATTTTATTAAATATTTTTACTTT
  AGGG  TGACTGGTT    CGC ACCG                                                                                                                                                                                              
  ||||  |||||||||    ||| ||||                                                                                                                                                                                              T
  TCCC  GCTGACCAA    GGC ATGG                                                                                                                                                                                              
AA    CC         -AAG   A    TGGGCGTTTGCGTCGAAAACGTCAACCATCGCCAATAGCCGCCAAACGTTGTTAGTGAGTTTAGCGAGAATTGACGATGTTTGGCGAGACTTAGAGTATTTAAGTTTTCGACCGAGGTCGATCGCAAACGCCAACGCCTGCCAACGCCCTCCCATTTAAAAAAAAGAAAAAAAATTTTGTTATATATATG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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