Plant MITE

SE0450300

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2670
Brassica rapa
SE0450300
PIF/harbinger
To2
A05:16000940-16001200
TTA
AGAGCATCTCCAACCCCACTCTATTTTTCACTCTAAAATAGAGT

Secondary structure and sequence

TSD TIR

5'

3'

TT   G         --C CC           -C               TTA    AAAAAA   TCCAATGGTACTCTATTTCTCACTCTATAATAGAGTGAAAAATAGGTTTACTCCAAATATAGAGTAACTTG
  AGA CATCTCCAA   C  ACTCTATTTTT  ACTCTAAAATAGAGT   GGGT      TGC                                                                       
  ||| |||||||||   |  |||||||||||  |||||||||||||||   ||||      |||                                                                       T
  TCT GTAGAGGTT   G  TGAGATAAAAG  TGAGATTTTATCTCA   TTGA      GAT                                                                       
AT   G         ACC AA           AA               ---    ------   ATTATCTCAAACTCAAACGAGGTTACCATGAGATAAAATCTCATCTTTTATCTCACTACTTGTTTTTTTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0450300

TTAGAGCATCTCCAACCCCACTCTATTTTTCACTCTAAAATAGAGTTTAGGGTAAAAAATGCTCCAATGGTACTCTATTTCTCACTCTATAATAGAGTGAAAAATAGGTTTACTCCAAATATAGAGTAACTTGTTTTTTTTTTGTTCATCACTCTATTTTCTACTCTAAAATAGAGTACCATTGGAGCAAACTCAAACTCTATTATAGAGTTACTCTATTTTAGAGTAAGAAAATAGAGTAAGCCATTGGAGATGGTCTTA

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