SE0420303

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2673
  • Brassica rapa
  • SE0420303
  • Mutator
  • M10
  • A09:4658513-4658681
  • TTTCTATAA
  • AAGGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTCTAT     AAATTGCACCC      A         CC        ACTAA  AACCAAAAACACAAATTCTCTCCACTTTTC
       AAGGG           AGTGAC TAAAAAAAA  CAAAATTG     GT                              
       |||||           |||||| |||||||||  ||||||||     ||                              T
       TTCCC           TTATTG GTTTTTTTT  GTTTTAAT     AA                              
AATATCT     GAATAAACAAT      -         TC        ---CC  AGATCTCTTTACGATTTCTCTCTGTACTTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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