SE0430304

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2674
  • Brassica rapa
  • SE0430304
  • hAT
  • Hat14
  • A05:2468504-2469037
  • CAGCAAAT
  • GC

Secondary structure and sequence

TSD    TIR
5'



3' 
  CA  AAAT           ACTTTACC  ATATCCGAAGTGGCACCCGAACCCGATCCGAAAAACCCGAACCGAAATCCGAACCGAAGTAACAAAATACCCGAACGGGTATTGAATTAGGAGAGATTGGATACCCGAACCCGAATGGATAATATCCGAACCCGAATGGATATCCGAAGATAACCGAACATATGTATAATTAACCTTATATTTCTAGTTTACATCTTTTTTAGTTTTAAAATGTTATGTCCAAATCTATTAACCATTT
    GC    TAGGGGTGGGC        CG                                                                                                                                                                                                                                              
    ||    |||||||||||        ||                                                                                                                                                                                                                                              A
    CG    ATCCCCACCCG        AT                                                                                                                                                                                                                                              
TAAA  --AC           -CAAGCCC  GGGCAAGCCCAAGCCCAGCCCATAAAACCTAAAAGCCCATAAAGCCATATCTCCACATCTTGGGCAAGCCCATAAAGATATGAAGCCCAGCCCAAGCCCATAAAAATCAAGCCTAAGCCAATAAAGCCTAGCCTAAGCCTATAAATCTAAAACTTTTTTTTTAATTTAAAAAGTAAAGAATTTAAAGAACATAAATTTTTATATTTAAAATGAATTGAAGAAAAATAAAAATTATCTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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