SE0450309

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2679
  • Brassica rapa
  • SE0450309
  • PIF/harbinger
  • To2
  • A03:20648281-20648541
  • TAA
  • AGGGCATCTCCAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   G         --CTCC            TC               TTAGAATAAAAA       ATAGTACTATATTTCTCACTCTATAATAGAGTGAAAAATAGGTTTACTCCAAATATAGAGTAACTTGTT
  AGG CATCTCCAA      ACTCTATTTTTT  ACTCTAAAATAGAGT            TGCTCCA                                                                     
  ||| |||||||||      ||||||||||||  |||||||||||||||            |||||||                                                                     T
  TCT GTAGAGGTT      TGAGATAAAAAA  TGAGATTTTATCTCA            TTGAGAT                                                                     
AA   G         ACCGAA            --               ------------       ATTATCTCAAACTTAAACGAGGTTACCATGAGATAAAATCTCATCTTTTATCTCACTACTTGTTTTTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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