SE0450310

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2680
  • Brassica rapa
  • SE0450310
  • PIF/harbinger
  • To6
  • A07:18301932-18302237
  • TAA
  • AGAGCATCTCCAATGTATGTCTCTATATTTTCCTCTAAAATAGAGATCTCTATTATAGAGGTGGATTTTCTCCAATGTATGCCTCTATAATAGAGTTCCTCTATTTTAGAGGAAAATATAGAGA

Secondary structure and sequence

TSD    TIR
5'



3'
TA   G          G   ----------             CC             -T                     T                                     -   A              AATC        TAA     TA
  AGA CATCTCCAAT TAT          GTCTCTATATTTT  TCTAAAATAGAGA  CTCTATTATAGAGGTGGATTT CTCCAATGTATGCCTCTATAATAGAGTTCCTCTATTT TAG GGAAAATATAGAGA    CTATTTTT   CTCTA  
  ||| |||||||||| |||          |||||||||||||  |||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    ||||||||   |||||   
  TCT GTAGAGGTTG GTG          TAGAGATATAAAA  AGATTTTATCTCT  GAGATAATATCTCCACCTAAA GAGGTTACATACGGAGATATTATCTCAAGGAGATAAA ATC CCTTTTATATCTCT    GATAAAAG   GAGAT  
AA   G          G   GAGATAAAAA             -A             TT                     C                                     T   C              AAAC        -TA     TT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End