SE1620001

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2682
  • Manihot esculenta
  • SE1620001
  • Mutator
  • M1
  • scaffold11494:65675-66080
  • TTTATAAAA
  • TTTATAAAAGAAAAAATTACTACTTAGTCCCTATTGTATGAGAAACTCACTAGTTAGTCTCCCGATTTTAAACAATAAAATAAAATGTTCTTGATATTTTAAAAAGTCTACTACTTAATCACTGCGATAATTTTTTTTGTTATGTATT

Secondary structure and sequence

TSD    TIR
5'



3'
         A   AA        C           T     -               A     C       A  C    AAA         C              A        C   A  A  G  A  A    TT      T     TTACTA TT    CCTATGATTTTGAAAAACTTATTAGTTGCTCTCTTAAGTTTTTA
 TTTATAAA GAA  AATTACTA TTAGTCCCTAT GTATG AGAAACTCACTAGTT GTCTC CGATTTT AA AATA   TAAAATGTT TTGATATTTTAAAA GTCTACTA TTA TC CT CG TA TTTT  TTGTTA GTATT      C  AGTC                                            
 |||||||| |||  |||||||| ||||||||||| ||||| ||||||||||||||| ||||| ||||||| || ||||   ||||||||| |||||||||||||| |||||||| ||| || || || || ||||  |||||| |||||      |  ||||                                             
 AAATATTT CTT  TTAATGAT AATCAGGGATA TATAC TTTTTGAGTGATTAA CAGGG GCTAAAA TT TTAT   ATTTTGTAG GACTATAAAATTTT CAGATGAT AAT AG GA GT AT AAAA  GGCAAT CATAA      T  TTTT                                            
A        C   -C        A           T     C               C     A       C  A    GTA         A              A        C   C  A  G  A  C    TC      T     ---CGT --    CAGATTTTACGGGGACTATACCTCCCTAATTAATCATTTGAAAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End