SE1620002

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2683
  • Manihot esculenta
  • SE1620002
  • Mutator
  • M2
  • scaffold07402:318574-318957
  • TTTATTTTA
  • AGGGAAAATTACTTTGTAGTCCCTGAGGTTTAACGTAATTAACACTTCTGTCCCTCTATTTTGGCGACCCAACACTTAAGTCCTTCACTTTCTTTTCTGTCCAACTTCGTAGTCCTTCCGTCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTATTTT       A       G                                                                                        C                   AAAT          ---GACAC   AATTGACAAAATTAACCCCTTCTTTCACATTGAAAG
        AGGGAAA TTACTTT TAGTCCCTGAGGTTTAACGTAATTAACACTTCTGTCCCTCTATTTTGGCGACCCAACACTTAAGTCCTTCACTTTCTTTTCTGTCCAA TTCGTAGTCCTTCCGTCCA    AGCCGTTTGG        GTG                                    
        ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    ||||||||||        |||                                    A
        TCTCTTT AATGAAA ATCAGGGACTCCAAATTGCATTAATTGTGAAGACAGGGAGATAAAACCGCTGGGTTGTGAATTCAGGGAGTGAAAGAGAAGGCAGGTT AAGCATCAGGAAGGCAGGT    TTGGCAAACC        AGT                                    
ATTTTATT       A       A                                                                                        T                   AAAT          AGTTTCTC   TTCCACTCTACACTATTAAAAAAGGTTTTTATGGGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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