SE1630004

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2685
  • Manihot esculenta
  • SE1630004
  • hAT
  • Hat3
  • scaffold03544:33754-34495
  • TTCACAAT
  • TAGGGGTGTAAATGAACC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTCACAAT                  AAACC           ATTCGATGTTCGATTCGATAAAAGCTCGACCGAGCTCGACTCGATTTCTAAACGAGCCTAGCTCGAGCTTAATTTTTAGGCTCGTTTGGTAAACGAGCCAAGCTTGAGCTCCATAGTATTCGGCTCGTTAAGGCTCGTGAGCTCGGCTCGTTTCTGAGTTCATGAGCAGGCTCGCGAATAAGCTCGTGAACAGTCTCATTAAGCAAACTGAAATTACTATCATAAGAGAAATAAACTCAAACCCTGCATATTCTTTAATGAGCCAAATTTAAATTTTTTAAAATTCAGCTCTATATAGTTTAGTTATACTCTTAAACTTGTATATATTT
        TAGGGGTGTAAATGAACC     GTTCGTGAGCT                                                                                                                                                                                                                                                                                                                                         
        ||||||||||||||||||     |||||||||||                                                                                                                                                                                                                                                                                                                                         G
        ATTCCCACATTTGTTTGG     GCTCGGCTCGA                                                                                                                                                                                                                                                                                                                                         
TAACACTT                  -CTCA           AACTTCTCGAGTTCGAACCAAGCAATTTTAAAAAAGCTCGAGCTCGACTTAAGCTCGAAATGAGTATAGCTTGAGCTCGGCTCATAATTCTTCGAGTTCGAACCGAGCAAATCGTTTGCTCGAATCTGCTCAGCTCAAAAATAACTCGACTCAGCTCGAAAATAGCTCGACTCAGAGTTTATTAAGTGTTCATTAAATTAAATAAATGTACATATTACTCAAAATCAAATTTTGATTATTCAAATTTTGATTTTATTAAAATCAATTTATTCATATAGATGTTTAATCGTACATTTGAATATTTCTACTCAAAAATTTAGAATTACTAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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