Plant MITE

SE1650005

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2686
Manihot esculenta
SE1650005
PIF/harbinger
To1
scaffold08799:507879-508114
TTA
AGAGCCTGTTTGACATT

Secondary structure and sequence

TSD TIR

5'

3'

TT  A         A    AAGT    AA   ------             -      AA     CAATTTTAGATGATGTTAAAAAAAGCAGTTTGGGAAAGTTGTTTTGTTATTTTTATAT
  AG GCCTGTTTG CATT    TTGG  GCT      AGAAAAGTGCTTT TTAGAA  AACAT                                                          
  || ||||||||| ||||    ||||  |||      ||||||||||||| ||||||  |||||                                                           
  TC CGGACAAAC GTAA    AATC  CGA      TCTTTTCGTGAAA AATTTT  TATGA                                                          
AT  C         C    CGAC    -A   CACAAC             T      --     TAAATCTTTCATAATTTTTTATTAAATTTTAATAAAAACTGTATCAAATCGATATTCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1650005

TTAGAGCCTGTTTGACATTAAGTTTGGAAGCTAGAAAAGTGCTTTTTAGAAAAAACATCAATTTTAGATGATGTTAAAAAAAGCAGTTTGGGAAAGTTGTTTTGTTATTTTTATATTCTTATAGCTAAACTATGTCAAAAATAATTTTAAATTATTTTTTAATACTTTCTAAATAGTATTTTTAATAAAGTGCTTTTCTCAACACAGCACTAACAGCAATGCCAAACAGGCCCTTA

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