Plant MITE

SE1610006

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2687
Manihot esculenta
SE1610006
Tc1/Mariner
St1
scaffold12448:34000-34277
TA
TACTCCCTCCATT

Secondary structure and sequence

TSD TIR

5'

3'

             CCAA   T        T    -       -----       CCAAAATTATTATCCACTTTGTTTTT      ---- TT      ----   TAAATTCACTATTATAACTCTATTTAATTTTATCTTATTTCCAAAATAACTCCT
TACTCCCTCCATT    AAT TTTGTCTA CTTT CTTTTTT     TGTTATT                          TTAGAT    A  GTTAAT    ATG                                                      
|||||||||||||    ||| |||||||| |||| |||||||     |||||||                          ||||||    |  ||||||    |||                                                      C
ATGAGGGAGGTAG    TTA AAATAGAT GAAA GAAAAAG     ATAATAA                          AAAATA    A  AAGGTT    TGT                                                      
             AATA   T        -    T       TGTGT       --------------------------      ATTG --      GATA   GTAGAATTTTGATAATTTAAAGTAATTTATGATTCTCTACAAAACTATTAATTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1610006

TACTCCCTCCATTCCAAAATTTTTGTCTATCTTTCTTTTTTTGTTATTCCAAAATTATTATCCACTTTGTTTTTTTAGATATTGTTAATATGTAAATTCACTATTATAACTCTATTTAATTTTATCTTATTTCCAAAATAACTCCTCATTAATTATCAAAACATCTCTTAGTATTTAATGAAATTTAATAGTTTTAAGATGTGTATAGTTGGAAAGTTAATAAAAAATAATATGTGTGAAAAAGTAAAGTAGATAAATATTATAAGATGGAGGGAGTA

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