SE1620007

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2688
  • Manihot esculenta
  • SE1620007
  • Mutator
  • M3
  • scaffold06631:760876-761357
  • AAGTTTATT
  • AAGTTTATTTCGCCAAATATATACTTATACCCCTGTACTA

Secondary structure and sequence

TSD    TIR
5'



3' 
    TT    C  CA        C  A             TTTCAT    G      A                -TTA         G   ----------------------------CCCTAAAC      AAAATTGTAACAATTACAAACTAACCATATCATTGATGATTTATAAAAGAAAAAAAAAGTCAAAAATAGTTCATCTTATTGTTAACTGTACTCAAAATTTTATTGACTAGACTCTAAATTTCA
AAGT  ATTT GC  AATATATA TT TACCCCTGTACTA      ATTA TTTATT AACACCTGAACTAAAA    TAACTTATT AAC                                    TTACAA                                                                                                                           
||||  |||| ||  |||||||| || |||||||||||||      |||| |||||| ||||||||||||||||    ||||||||| |||                                    ||||||                                                                                                                            
TTTA  TGAA CG  TTATATAT AA GTGGGGATATGAT      TAGT GGATAA TTGTGGACTTGGTTTT    ATTGGATAA TTG                                    ATGTTT                                                                                                                           
    TT    C  AC        A  C             TAACTC    -      C                TAAC         G   TGAACTTTAATATTTTTATTTTTATTTTTTTAATTT      AATCAGTACAATAACTATTAAATAGTCTCTTTTCATTTTTAACTAATACGTATAACAAAAACGATTGATATGATAATTAAAAATATTTAACTATCACAATCTGTTCATATGAAATAACAAAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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